My research falls into the main topic areas listed below (with the exception of some collaborations and side projects). Within each area I use integrative techniques that span different levels of organization. I study trait evolution starting from the phenotype, where I try to understand the selective pressures shaping that trait, down to the developmental constraints involved in producing traits to the genotype, or genetic regions responsible for coding that trait. I also ask questions across time scales, ranging from broad evolutionary patterns found in birds or beyond, to specific signatures of evolution observed over several generations (see example figure below). My research uses and builds the ornithology collection at NHMLA.

  • host-pathogen co-evolution

    Hosts and pathogens are in a constant evolutionary arms race as hosts evolve to be better at resisting pathogens, and pathogens evolve to be better at infecting hosts. My research focuses on studying this process from the hosts' perspective. Specifically, I try to understand if this interaction is resulting in signatures of selection at the same genes in divergent species. I recently found that in birds (and mammals!), genes under positive selection are likely to be immune genes, especially those that interact with viruses. Now, I am using data from bird populations to understand whether we observe these same genes under selection at more recent time scales. I am also investigating the process of pathogen-mediated selection by studying a time-series of House Finch genomes. House Finches were exposed to a new pathogen (Mycoplasma gallisepticum) in 1994, resulting in a 60% decline in many places. By studying how the genome has changed through time (before the new pathogen, 10 years after, and 20 years after) I am learning that resistance likely evolved at many regions of the genome rather than at a single gene. 

    Photo: House Finches in the NHMLA Nature Garden

  • plumage coloration

    Plumage coloration is an ideal system for studying how natural and sexual selection shape trait evolution. To date, much of my research has focused on the evolution of tanager plumage coloration from the avian visual perspective, by comparing how plumage evolution evolves differently in males and females, how light environment has shaped the evolution of plumage coloration, and how competition has affected trait diversification. I am continuing my work on the evolution of plumage coloration with an expansion in two directions. The first is to explore the evolution of plumage patterning - that is, incorporating the spatial location of a color on a bird's body. The second is to study how the underlying coloration mechanisms (pigments, feather nano- and microstructure) evolve to produce the observed plumage coloration. Eventually I would like to better understand the genes that produce these coloration mechanisms evolve.

    Photo: Silver-beaked Tanager, by Nick Athanas - CC-2.0

  • introduced species

    One of the results of globalization has been the introduction of species from one part of the world to another. These introduced species are sometimes innocuous, mixing into the native ecological communities without much impact. However, they can also have huge impacts on native species, for example by competing for limited resources (e.g. nest cavities, food), bringing new diseases, or becoming new predators. Much research focuses on the impacts of introduced species to the native species, but the introduced species themselves can provide opportunities to understand the genomic impacts of a founder event (when a new population is established by a few individuals followed by an expansion) and how a species can adapt to a new environment - both important questions for conservation. I have used the House Finch as a model system to study the genomic impacts of introductions to the eastern United States and Hawaiian Islands. Moving forward, I will study the many introduced birds of Los Angeles (like the Pin-tailed Whydah, pictured to the left) to understand both how introduced species evolve in new environments as well as some of the impacts they have had on native species.

    Photo: Pin-tailed Whydah, by Derek Keats - CC-2.0

© 2019 by Allison Shultz

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